NaviCom
Connects data to network maps

Welcome to NaviCom, a platform for generating interactive network based molecular portraits using high-throughput datasets.
NaviCom connects between cBioPortal database and NaviCell web service and allows to display various high-throughput data types simultaneously on the network maps in one click.

Select a study to fetch data, the network map to display the data on, and the type of display. Click ‘Perform data visualization’ to obtain a network-based molecular portrait.
For more details, see the tutorial.

Note that displaying data on network maps may take several minutes depending on the size of the dataset and the map.
Supported browsers : Firefox, Google Chrome, Safari.

Data

Acute Myeloid Leukemia TCGA NEJM 2013 Acute Myeloid Leukemia TCGA Provisional Adrenocortical Carcinoma TCGA Provisional Bladder Cancer MSKCC Eur Urol 2014 Bladder Cancer MSKCC J Clin Oncol 2013 Bladder Urothelial Carcinoma BGI Nat Genet 2013 Bladder Urothelial Carcinoma TCGA Nature 2014 Bladder Urothelial Carcinoma TCGA Provisional Brain Lower Grade Glioma TCGA Provisional Breast Invasive Carcinoma British Columbia Nature 2012 Breast Invasive Carcinoma Broad Nature 2012 Breast Invasive Carcinoma Sanger Nature 2012 Breast Invasive Carcinoma TCGA Cell 2015 Breast Invasive Carcinoma TCGA Nature 2012 Breast Invasive Carcinoma TCGA Provisional Breast cancer patient xenografts British Columbia Nature 2014 Cancer Cell Line Encyclopedia Novartis Broad Nature 2012 Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma TCGA Provisional Cholangiocarcinoma National Cancer Centre of Singapore Nature Genetics 2013 Cholangiocarcinoma National University of Singapore Nature Genetics 2012 Colorectal Adenocarcinoma Genentech Nature 2012 Colorectal Adenocarcinoma TCGA Nature 2012 Colorectal Adenocarcinoma TCGA Provisional Colorectal Adenocarcinoma Triplets MSKCC Genome Biology 2014 Cutaneous squamous cell carcinoma DFCI Clin Cancer Res 2015 Esophageal Adenocarcinoma Broad Nat Genet 2013 Esophageal Carcinoma TCGA Provisional Esophageal Squamous Cell Carcinoma ICGC Nature 2014 Ewing Sarcoma Institut Cuire Cancer Discov 2014 Gallbladder Carcinoma Shanghai Nat Genet 2014 Glioblastoma TCGA Cell 2013 Glioblastoma TCGA Nature 2008 Glioblastoma Multiforme TCGA Provisional Head and Neck Squamous Cell Carcinoma Broad Science 2011 Head and Neck Squamous Cell Carcinoma Johns Hopkins Science 2011 Head and Neck Squamous Cell Carcinoma TCGA in revision Head and Neck Squamous Cell Carcinoma TCGA Provisional Infant MLL-Rearranged Acute Lymphoblastic Leukemia St Jude Nat Genet 2015 Intrahepatic Cholangiocarcinoma Johns Hopkins University Nature Genetics 2013 Kidney Chromophobe TCGA Cancer Cell 2014 Kidney Chromophobe TCGA Provisional Kidney Renal Clear Cell Carcinoma BGI Nat Genet 2012 Kidney Renal Clear Cell Carcinoma TCGA Nature 2013 Kidney Renal Clear Cell Carcinoma TCGA Provisional Kidney Renal Papillary Cell Carcinoma TCGA Provisional Liver Hepatocellular Carcinoma AMC Hepatology 2014 Liver Hepatocellular Carcinoma RIKEN Nature Genetics 2012 Liver Hepatocellular Carcinoma TCGA Provisional Lung Adenocarcinoma Broad Cell 2012 Lung Adenocarcinoma TCGA Nature 2014 Lung Adenocarcinoma TCGA Provisional Lung Adenocarcinoma TSP Nature 2008 Lung Squamous Cell Carcinoma TCGA Nature 2012 Lung Squamous Cell Carcinoma TCGA Provisional Lymphoid Neoplasm Diffuse Large B-cell Lymphoma TCGA Provisional Malignant Peripheral Nerve Sheath Tumor MSKCC Nature Genetics 2014 Medulloblastoma Broad Nature 2012 Medulloblastoma ICGC Nature 2012 Medulloblastoma PCGP Nature 2012 Melanoma Broad Dana Farber Nature 2012 Metastatic Prostate Cancer SU2C PCF Dream Team Robinson et al. Cell 2015 Multiple Myeloma Broad Cancer Cell 2014 NCI-60 Cell Lines NCI Cancer Res. 2012 Nasopharyngeal Carcinoma Singapore Nature Genetics 2014 Ovarian Serous Cystadenocarcinoma TCGA Nature 2011 Ovarian Serous Cystadenocarcinoma TCGA Provisional Pancreatic Adenocarcinoma ICGC Nature 2012 Pancreatic Adenocarcinoma TCGA Provisional Pancreatic Cancer UTSW Nat Commun 2015 Pancreatic Neuroendocrine Tumors Johns Hopkins University Science 2011 Papillary Thyroid Carcinoma TCGA Cell 2014 Pediatric Ewing Sarcoma DFCI Cancer Discov 2014 Pheochromocytoma and Paraganglioma TCGA Provisional Prostate Adenocarcinoma Broad Cornell Cell 2013 Prostate Adenocarcinoma Broad Cornell Nature Genetics 2012 Prostate Adenocarcinoma MSKCC Cancer Cell 2010 Prostate Adenocarcinoma TCGA in press Prostate Adenocarcinoma TCGA Provisional Prostate Adenocarcinoma CNA study MSKCC PNAS 2014 Prostate Adenocarcinoma Organoids MSKCC Cell 2014 Prostate Adenocarcinoma Metastatic Michigan Nature 2012 Renal Non-Clear Cell Carcinoma Genentech Nat Genet 2014 Rhabdomyosarcoma NIH Cancer Discov 2014 Sarcoma MSKCC Broad Nature Genetics 2010 Sarcoma TCGA Provisional Skin Cutaneous Melanoma Broad Cell 2012 Skin Cutaneous Melanoma TCGA Provisional Skin Cutaneous Melanoma Yale Nat Genet 2012 Small Cell Carcinoma of the Ovary MSKCC Nature Genetics 2014 Small Cell Lung Cancer CLCGP Nat Genet 2012 Small Cell Lung Cancer Johns Hopkins Nature Genetics 2012 Small Cell Lung Cancer U Cologne Nature 2015 Stomach Adenocarcinoma Pfizer and UHK Nature Genetics 2014 Stomach Adenocarcinoma TCGA Nature 2014 Stomach Adenocarcinoma TCGA Provisional Stomach Adenocarcinoma U Tokyo Nature Genetics 2014 Stomach Adenocarcinoma UHK Nature Genetics 2011 Thymic Epithelial Tumors NCI Nat Genet 2014 Thyroid Carcinoma TCGA Provisional Uterine Carcinosarcoma Johns Hopkins University Nat Commun 2014 Uterine Carcinosarcoma TCGA Provisional Uterine Corpus Endometrioid Carcinoma TCGA Nature 2013 Uterine Corpus Endometrial Carcinoma TCGA Provisional Uveal Melanoma TCGA Provisional

Sample:

Map

ACSN collection: ACSN global map Apoptosis mapewing Cell survival map EMT and cell motility map Cell cycle map DNA repair map AKT_MTOR APOPTOSIS_GENES CASPASES HIF1 MITOCH_METABOLISM MOMP_REGULATION TNF_RESPONSE HEDGEHOG MAPK PI3K_AKT_MTOR WNT_CANONICAL WNT_NON_CANONICAL CELL_CELL_ADHESIONS ECM (Extra Cellular Matrix) CYTOSKELETON_POLARITY EMT_REGULATORS CELL_MATRIX_ADHESIONS CELL_CELL_ADHESIONS APC APOPTOSIS_ENTRY CDC25 CYCLINA CYCLINB CYCLINC CYCLIND CYCLINE CYCLINH E2F1 E2F4 E2F6 INK4 P21CIP P27KIP RB WEE BER (Base excision repair) DR FANCONI G1_CC_PHASE G1_S_CHECKPOINT G2_CC_PHASE G2_M_CHECKPOINT HR M_CC_PHASE MMEJ MMR NER (Nucleotide excision repair) NHEJ S_CC_PHASE S_PHASE_CHECKPOINT SPINDLE_CHECKPOINT SSA (Single-strang annealing) TLS (Translesion synthesis)
or
NaviCell collection: Ewing Sarcoma signaling network Crosstalk between Notch and p53 signaling pathways Signaling pathways of Alzheimer's disease Mast Cell Activation Network
or

Display modes

Complete display Mutations and genomic data Expression and copy number Expression and mutations Expression and methylation Expression and miRNA Expression and proteomics Expression
or
Export the dataset to NaviCell and perform the visualisation manually.

Display configuration

Color for highest values:
Color for zero (if present):
Color for lowest values:

Perform data visualisation


(or Download cBioPortal data)